This was fixed in maverick some time ago:

mapserver (5.6.5-1) unstable; urgency=low

  * New upstream release with an important bug fix about scale calculation.
  * Added OGC SOS server support.

mapserver (5.6.4-1) unstable; urgency=high

  [ Alan Boudreault ]
  * New upstream release, with important security bug fixes.
  * Fix Buffer overflow in msTmpFile function.
    [http://trac.osgeo.org/mapserver/ticket/3484]
  * Fix insecure mapserv CGI command-line debug args.
    [http://trac.osgeo.org/mapserver/ticket/3485]

  [ Francesco Paolo Lovergine ]
  * Policy bumped to 3.9.4, no changes required.
  * Note that in practice bashisms are avoided due to current options selection.
    (closes: #582098)
  * Urgency set to high due to security fixes included.

mapserver (5.6.3-2) unstable; urgency=low

  * Added palette support for rgba png.
 -- Michael Bienia <[email protected]>   Tue,  20 Jul 2010 16:44:16 +0100

** Changed in: mapserver (Ubuntu Maverick)
       Status: Confirmed => Fix Released

-- 
buffer overflow + insecure mapserv CGI command-line debug args
https://bugs.launchpad.net/bugs/603593
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