Looks like the power off failure for 2.6.20-12-generic was a one off, it has 
been working flawlessly since.
I reinstalled the 2.6.20-12-386 kernel and it won't power off, attaching the 
relevant section of /var/log/messages
messages.txt covers:
1) Booting 2.6.20-12-386
2) Shutdown from GDM menu
3) System does normal shutdown but doesn't power off
4) Hit reset button
5) Booting 2.6.20-12-386

I haven't looked into the BIOS update, but if it works in the generic
kernel it should work in 386, right?

** Attachment added: "386 messages.txt"
   http://librarian.launchpad.net/7039667/messages.txt

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Computer doesn't power off after shutdown (Feisty)
https://launchpad.net/bugs/96236

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