Which module is in the main kernel? hdaps.ko? That was always there and 
tp-smapi always overriden it just fine.
It's in drivers/hwmon/hdaps.ko ccording to 
http://packages.ubuntu.com/search?searchon=contents&keywords=hdaps.ko&mode=exactfilename&suite=lucid&arch=any
tp-smapi-dkms installs hdaps.ko under updates/hdaps.ko, which has higher 
priority than drivers/

Thus I can't understand your problem :)

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dkms compiles and installs modules fine, but doesn't remove existing modules
https://bugs.launchpad.net/bugs/569161
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