This would seem to be a simple false positive in snort, not a problem
with APT.

According to this page

http://www.w3.org/Protocols/rfc2616/rfc2616-sec3.html#sec3.8

That is a perfectly acceptable user-agent string.

Marking Confirmed, as this has been seen by multiple users.

Marking as Medium, as this is going to affect pretty much anybody using
snort on Ubuntu, thought it does have the workaround of disabling the
rule.

Changing apt to snort, as this is not a problem with apt, but rather a
problem with snort's rules that could cause other false positives.

The APT-HTTP/1.3 User-Agent string is still in apt 0.8.3:

./methods/http.cc:              "Debian APT-HTTP/1.3 ("VERSION")") +
"\r\n\r\n";


** Package changed: apt (Ubuntu) => snort (Ubuntu)

** Changed in: snort (Ubuntu)
   Importance: Undecided => Medium

** Changed in: snort (Ubuntu)
       Status: New => Confirmed

-- 
apt-get update causes "WEB-MISC Invalid HTTP Version String" warning in Snort
https://bugs.launchpad.net/bugs/258155
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