This is fixed for me in Ubuntu Software Center 2.1.19 in Maverick, and
has been for a while I think. Software list views now use native
progress bars in their native colors. If you still have the problem,
please specify which theme you use (and where to find it, if it's one
that isn't shipped by default), and attach a screenshot. Thanks!
** Changed in: software-center (Ubuntu)
Status: New => Fix Released
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Progress bars in software list views use incorrect theme colors
https://bugs.launchpad.net/bugs/504453
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