I'm not an expert, but I'd try adding these two lines to /etc/apt/apt.conf:
DPkg::Pre-Invoke {"mount -o remount,exec /tmp";};
DPkg::Post-Invoke {"mount -o remount /tmp";};
This should remount /tmp as exec long enough for preconfigure packages
with apt, then remount again as noexec after finished installing.
Alternately, I believe something like this would work as well in case you'd
prefer to avoid remounting.
APT::ExtractTemplates::TempDir "/var/tmp";
(In this case, /var/tmp would have to be mounted as exec though.)
--
When /tmp is mounted noexec, preconfigure fails
https://bugs.launchpad.net/bugs/90085
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