Hrm, interesting.  That's a really straight-forward setup.

Try this, from a terminal, before running byobu.
  mv -f $HOME/.byobu $HOME/.byobu.orig
  mv -f $HOME/.screenrc $HOME/.screenrc.orig

That should make a backup copy of your configuration.  Now run
  byobu

This should clean out any previous configuration and start you off
fresh.

Let me know if that solves the issue for you.

Dustin

-- 
Function keys (all) don't work in byobu
https://bugs.launchpad.net/bugs/649193
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