hum, wait. I misread, I don't have this bug under mutter only there.
Can you try, on a normal gnome-session, to run mutter --replace, change
the theme and back to one where buttons are on the left?
** Changed in: mutter (Ubuntu)
Status: New => Incomplete
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[Gnome-3]Mutter does not respect window button placement
https://bugs.launchpad.net/bugs/652595
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