As I found ou on http://www.imagemagick.org/Usage/formats/#bmp the conversion 
can be done using
 $ convert blop.jpg  ppm:- | convert - BMP3:image.bpm

Now cuneiform takes the BMP file. But I guess that's not an usual
workaround a normal user who just wants to OCR a few documents will
try... So the problem persists.

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Package a libmagick++-enabled version of cuneiform
https://bugs.launchpad.net/bugs/654767
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