Are you saying you uninstalled clamtk and there's still a right-click
action trying to send the pdf to clamtk?

Can you run "sudo update-desktop-database" from a terminal window, or at
least log out and log back in and see if the problem still persists?
It's possible that the uninstall process isn't updating the mimetype
associations.

-- 
Thunderbird starts virusscan instead of the right application when opening 
attachments
https://bugs.launchpad.net/bugs/487057
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