When you apt-get remove --purge mysql-server-4.1, debconf should ask you a question on whether to remove all data.
** Changed in: mysql-dfsg-4.1 (Ubuntu)
Status: Unconfirmed => Rejected
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downgrading mysql-server from 5.0 to 4.1 fails on install
https://bugs.launchpad.net/bugs/36868
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