*** This bug is a duplicate of bug 587435 ***
    https://bugs.launchpad.net/bugs/587435

You may try this workaround  :

do :
  aptitude install chrony

modifiy /etc/init.d/chrony (see the two "sleep 5" before /bin/pidof)  :
[...]
    start)
        start-stop-daemon --start --verbose --exec $DAEMON || { echo "$DAEMON 
already running."; exit 1; }
        sleep 5
        /bin/pidof $DAEMON > /dev/null || { echo "$DAEMON failed to start."; 
exit 1; }
        putonline
        ;;
    stop)
        start-stop-daemon --stop --verbose --oknodo --exec $DAEMON
        rm -f /var/run/chrony-ppp-up
        ;;
    restart|force-reload)
        echo -n "Restarting $DESC: "
        start-stop-daemon --stop --quiet --exec $DAEMON
        sleep 1
        start-stop-daemon --start --quiet --exec $DAEMON -- -r
        sleep 5
        /bin/pidof $DAEMON > /dev/null || { echo "$DAEMON failed to restart."; 
rm -f /var/run/chrony-ppp-up; exit 1; }
        putonline
        ;;
[...]

do :
  invoke-rc.d chrony stop ; aptitude -f install chrony

should be OK

-- 
chrony install produces install error
https://bugs.launchpad.net/bugs/611776
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