This could be a hardware issue. It could be useful you do a chkdsk
again, saving the error messages to a file ("chkdsk /f X: > chkdsk.log")
and post them. To identify possible bad sectors, do a "chkdsk /r".

How full is your partition ?

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All may system stop working when i use an usb storage media, system crashes.
https://bugs.launchpad.net/bugs/681052
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