My friend has this weird problem too. Mouse clicks stop working randomly
without any apparent reason, while he can still move the pointer.
Keyboard works, but Alt-Tab stops working too, so that it becomes
impossible to switch between windows. Looks like a problem with window
manager, but this happens both with metacity and compiz. If I connect to
his desktop via VNC, I cannot click anything either, Alt-Tab doesn't
work for me too. Xev doesn't show any mouse events, event mouse movement
over the window. If the mouse is re-plugged, everything starts working
again.

Using 64-bit Ubuntu 10.04 and latest (260.19.21) NVIDIA driver installed
by hand (just becuase GeForce GTX 460 isn't supported by any driver
available in Ubuntu repos). Otherwise the system is untouched.

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Mouse clicks stop working sporadically
https://bugs.launchpad.net/bugs/41301
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