I found out Crop can be used as a workaround for this.

1) Crop out the area with the red eyes
2) Now use the redeye function on the limited picture
3) Use crop again and move the box to an other area of red eyes.
4) When done. Crop the picture again to the full size (or any other desired 
size).

Hope this can help.

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https://bugs.launchpad.net/bugs/652158

Title:
  cant do red eye removal while zoomed

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