I don't think this problem is related to big-endianness. I just had it
on a x86 system that was upgraded from feisty -> hardy -> lucid. In my
case the fix was simple: apt-get install seahorse-plugins. For whatever
reason that dependency doesn't seem to be pulled in when you upgrade.
I'd recommend folks try that first if they are having problems.

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https://bugs.launchpad.net/bugs/201786

Title:
  ssh Agent admitted failure to sign using the key on big endian machines

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