This is actually already fixed in Lucid and Maverick with the AppArmor 2.5.1 
SRU. When I looked at the denied path, I missed that. Eg, 
/etc/apparmor.d/abstractions/ubuntu-email should have:
  /usr/lib/thunderbird-3*/thunderbird{,.sh} PUx,

This should catch the /usr/lib/thunderbird-3.0.8/thunderbird denial.
Sorry for the confusion.

** Changed in: apparmor (Ubuntu Lucid)
       Status: Triaged => Fix Released

** Changed in: apparmor (Ubuntu Maverick)
       Status: Triaged => Fix Released

** Changed in: apparmor (Ubuntu Natty)
       Status: Triaged => Fix Released

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https://bugs.launchpad.net/bugs/662175

Title:
  Clicking on "mailto:"; URLs on Firefox doesn't start the mail application

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