I also suffer from the hanging authentication dialog but also in places
other than update manager.

I think the dialog is somehow launched by /usr/lib/policykit-1/polkit-
agent-helper-1 as that process appears at the same time as the
authentication dialog. After entering the password, the process
disappears, but the dialog box is left open (I'm not sure which process
actually owns the window). It is necessary to close the dialog box with
the window manager (e.g. with the X button in the titlebar) to progress
any further.

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https://bugs.launchpad.net/bugs/670535

Title:
  Update manager's authentication request needs fixing

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