This looks to be the relevant upstream bug
http://bugs.php.net/bug.php?id=53352 and commit:
http://svn.php.net/viewvc?view=revision&revision=305698 that fixed it.
I'm building and testing packages with that commit applied to verify it
fixes the issue.

** Bug watch added: bugs.php.net/ #53352
   http://bugs.php.net/bug.php?id=53352

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https://bugs.launchpad.net/bugs/701765

Title:
  open_basedir breaks by restricting paths to files that should be
  allowed; Unknown: Failed opening required
  '/usr/share/phpmyadmin/index.php' (include_path='.') in Unknown on
  line 0

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