To disable commenting out of PPAs you can either set:
export RELEASE_UPRADER_ALLOW_THIRD_PARTY=1
or edit the file:
/etc/update-manager/release-upgrades.d/uprades.cfg
and add
[Sources]
AllowThirdParty=true

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https://bugs.launchpad.net/bugs/680088

Title:
  Upgrade fails "Can not mark 'kubuntu-desktop' for upgrade "

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