This problem seems to be occurring on Arch as well. There is a thread about it 
here [url]https://bbs.archlinux.org/viewtopic.php?id=113516[/url], which links 
to a kernel patch that may solve the issue:
[url=http://git.kernel.org/?p=linux/kernel/git/torvalds/linux-2.6.git;a=commitdiff;h=e44718318004a5618d1dfe2d080e2862532d8e5f]jbd2:
 call __jbd2_log_start_commit with j_state_lock write locked[/url]

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https://bugs.launchpad.net/bugs/607560

Title:
  jbd2 writing block every 5 - 10 seconds, preventing disk spin-down and
  making noise

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