It sounds to me like there are two separate issues here.
1) gnome-power-manager doesn't know if your system is plugged in
2) only one battery applet appears in Unity but two show up in the classic 
desktop

The former sounds like a kernel bug as looking at your DevkitPower.txt
log file I see the following:

/sys/devices/LNXSYSTM:00/device:00/PNP0A08:00/device:01/PNP0C09:00/ACPI0003:00/power_supply/AC

and line-power online appears to be no.  The latter sounds like a unity
bug and should probably be a separate report.

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https://bugs.launchpad.net/bugs/725062

Title:
  gnome-power-manager not recognizing power status correctly

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