I have exactly the same problem on Lucid 10.4.2. I tried setting up an
encrypted ~/Private directory using ecrypts-setup-private as I don't
want the whole homedir to be encrypted.  I can mount the directory, the
first time I do ls ~/Private I can see the content but after that ls
shows an empty directory.  I can create new files, copy them and such. I
see a new encrypted file appear in ~/.Private but ls ~/Private shows
nothing.  Strangely if I do 'ls -l Private/filename' that does show the
file properly

puppy.[nico]$ cd Private/
puppy.[nico]$ echo "blabla" > blabla
puppy.[nico]$ cat blabla
blabla
puppy.[nico]$ ls -l
total 0
puppy.[nico]$ ls -l blabla
-rw-r--r-- 1 nico sonytel 7 2011-03-04 15:03 blabla


Nautilus also shows an empty directory.

Note: my homedirectory is on a NFS share.

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https://bugs.launchpad.net/bugs/728842

Title:
  ls command not working properly in encrypted home dir

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