Okay I figured it out! At least on my system. 
Using: "ps -eopid,cmd,user,ppid | sed /\\[/d" 
I've managed to get some usefull output. The gnome system monitor didn't 
managed to gather the process information. These disapearing "root" process 
were not root processes at all. It was "sleep 0.1"  called by "bash 
/usr/share/playonlinux", so i guess it related to playonlinux and not to 
Ubuntu. Maybe its a bug. 
Also its, quiet anyoing that the gnome system monitor produced this faulty 
output...

cheers!

** Changed in: ubuntu
       Status: Incomplete => Fix Committed

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https://bugs.launchpad.net/bugs/606710

Title:
  Process with no name

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