Then this is a gksu problem. I have also noticed it sometimes, without
compiz.
** Changed in: gksu (Ubuntu)
Sourcepackagename: compiz => gksu
Importance: Undecided => High
Status: Needs Info => Confirmed
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With desktop effects enabled when using gksu system gets grey and only responds
to keyboard
https://bugs.launchpad.net/bugs/106008
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