It's possible to change eclipse's default jvm. Edit
/etc/eclipse/java_home and as the first line add /usr/lib/jvm/java-6-sun
Though it would be nice to make that happen as a patch and add sun java
6 as a dependency of eclipse.
** Changed in: eclipse (Ubuntu)
Status: Unconfirmed => Confirmed
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Eclipse do not use the default java machine
https://bugs.launchpad.net/bugs/89678
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