Public bug reported:

Binary package hint: unity

Since I prefer some applications are minimized in the tray bar (Skype, Pidgin, 
Mobloquer, etc.), I have added them to the Unity whitelist. These applications 
are also set to start at logon.
Now, sometimes it happens that these applications are not visible in the 
traybar. If I check in system monitor, I can see they are actually running.
I guess this is due to the fact Unity is not able to "grab" these application 
at startup, maybe because they start before Unity is loaded.

ProblemType: Bug
DistroRelease: Ubuntu 11.04
Package: unity 3.8.8-0ubuntu2
ProcVersionSignature: Ubuntu 2.6.38-8.42-generic 2.6.38.2
Uname: Linux 2.6.38-8-generic i686
Architecture: i386
CompizPlugins: 
[core,bailer,detection,composite,opengl,decor,mousepoll,vpswitch,regex,animation,snap,expo,move,compiztoolbox,place,grid,imgpng,gnomecompat,wall,ezoom,workarounds,staticswitcher,resize,fade,unitymtgrabhandles,scale,session,unityshell]
Date: Tue Apr 19 00:22:35 2011
InstallationMedia: Ubuntu 11.04 "Natty Narwhal" - Beta i386 (20110413)
ProcEnviron:
 LANGUAGE=it_IT:en
 LANG=it_IT.UTF-8
 SHELL=/bin/bash
SourcePackage: unity
UpgradeStatus: No upgrade log present (probably fresh install)

** Affects: unity (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: apport-bug i386 natty running-unity

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https://bugs.launchpad.net/bugs/765269

Title:
  Missing tray icons

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