Public bug reported:
Binary package hint: seaview
Since I upgraded to 11.04, I get some seaview crashes, not always predictible.
One crash example after doing an alignment with Muscle. I did 'Align All', then
'OK'.
[tristan@picodon may2011] seaview Opsine_copy2_20110502.mase
X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40
X_ChangeProperty: BadValue (integer parameter out of range for operation) 0x40
*** glibc detected *** seaview: corrupted double-linked list:
0x0000000002f9d1a0 ***
======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x76bb6)[0x7fe625908bb6]
/lib/x86_64-linux-gnu/libc.so.6(+0x78b21)[0x7fe62590ab21]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x73)[0x7fe62590e8e3]
seaview[0x42498f]
seaview[0x424a5c]
seaview[0x42648a]
seaview[0x4265cf]
/usr/lib/libfltk.so.1.1(_ZN8Fl_Menu_6pickedEPK12Fl_Menu_Item+0x51)[0x7fe626db8bd1]
/usr/lib/libfltk.so.1.1(_ZN14Fl_Menu_Button5popupEv+0x5e)[0x7fe626db966e]
/usr/lib/libfltk.so.1.1(_ZN14Fl_Menu_Button6handleEi+0xa0)[0x7fe626db9780]
/usr/lib/libfltk.so.1.1(_ZN8Fl_Group6handleEi+0x123)[0x7fe626da79f3]
======= Memory map: ========
00400000-00473000 r-xp 00000000 08:07 82643
/usr/bin/seaview
00673000-00674000 r--p 00073000 08:07 82643
/usr/bin/seaview
00674000-00678000 rw-p 00074000 08:07 82643
/usr/bin/seaview
00678000-0104c000 rw-p 00000000 00:00 0
02d35000-02fdc000 rw-p 00000000 00:00 0 [heap]
7fe61c000000-7fe61c021000 rw-p 00000000 00:00 0
7fe61c021000-7fe620000000 ---p 00000000 00:00 0
7fe623242000-7fe6232d1000 r--p 00000000 08:07 20216
/usr/share/fonts/truetype/ttf-dejavu/DejaVuSans-Bold.ttf
7fe6232d1000-7fe6232dd000 r-xp 00000000 08:07 191804
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fe6232dd000-7fe6234dc000 ---p 0000c000 08:07 191804
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fe6234dc000-7fe6234dd000 r--p 0000b000 08:07 191804
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fe6234dd000-7fe6234de000 rw-p 0000c000 08:07 191804
/lib/x86_64-linux-gnu/libnss_files-2.13.so
7fe6234de000-7fe6234e9000 r-xp 00000000 08:07 191806
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fe6234e9000-7fe6236e8000 ---p 0000b000 08:07 191806
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fe6236e8000-7fe6236e9000 r--p 0000a000 08:07 191806
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fe6236e9000-7fe6236ea000 rw-p 0000b000 08:07 191806
/lib/x86_64-linux-gnu/libnss_nis-2.13.so
7fe6236ea000-7fe623701000 r-xp 00000000 08:07 191801
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fe623701000-7fe623900000 ---p 00017000 08:07 191801
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fe623900000-7fe623901000 r--p 00016000 08:07 191801
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fe623901000-7fe623902000 rw-p 00017000 08:07 191801
/lib/x86_64-linux-gnu/libnsl-2.13.so
7fe623902000-7fe623904000 rw-p 00000000 00:00 0
7fe623904000-7fe62390c000 r-xp 00000000 08:07 191802
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fe62390c000-7fe623b0b000 ---p 00008000 08:07 191802
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fe623b0b000-7fe623b0c000 r--p 00007000 08:07 191802
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fe623b0c000-7fe623b0d000 rw-p 00008000 08:07 191802
/lib/x86_64-linux-gnu/libnss_compat-2.13.so
7fe623b0d000-7fe623b12000 r-xp 00000000 08:07 194830
/usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fe623b12000-7fe623d11000 ---p 00005000 08:07 194830
/usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fe623d11000-7fe623d12000 r--p 00004000 08:07 194830
/usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fe623d12000-7fe623d13000 rw-p 00005000 08:07 194830
/usr/lib/x86_64-linux-gnu/libXfixes.so.3.1.0
7fe623d13000-7fe623d1c000 r-xp 00000000 08:07 130595
/usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fe623d1c000-7fe623f1b000 ---p 00009000 08:07 130595
/usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fe623f1b000-7fe623f1c000 r--p 00008000 08:07 130595
/usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fe623f1c000-7fe623f1d000 rw-p 00009000 08:07 130595
/usr/lib/x86_64-linux-gnu/libXcursor.so.1.0.2
7fe623f1d000-7fe623f22000 r-xp 00000000 08:07 148694
/usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7fe623f22000-7fe624121000 ---p 00005000 08:07 148694
/usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7fe624121000-7fe624122000 r--p 00004000 08:07 148694
/usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7fe624122000-7fe624123000 rw-p 00005000 08:07 148694
/usr/lib/x86_64-linux-gnu/libXdmcp.so.6.0.0
7fe624123000-7fe624125000 r-xp 00000000 08:07 144362
/usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7fe624125000-7fe624324000 ---p 00002000 08:07 144362
/usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7fe624324000-7fe624325000 r--p 00001000 08:07 144362
/usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7fe624325000-7fe624326000 rw-p 00002000 08:07 144362
/usr/lib/x86_64-linux-gnu/libXau.so.6.0.0
7fe624326000-7fe624337000 r-xp 00000000 08:07 140255
/usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7fe624337000-7fe624536000 ---p 00011000 08:07 140255
/usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7fe624536000-7fe624537000 r--p 00010000 08:07 140255
/usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7fe624537000-7fe624538000 rw-p 00011000 08:07 140255
/usr/lib/x86_64-linux-gnu/libXext.so.6.4.0
7fe624538000-7fe62453a000 r-xp 00000000 08:07 191798
/lib/x86_64-linux-gnu/libdl-2.13.so
7fe62453a000-7fe62473a000 ---p 00002000 08:07 191798
/lib/x86_64-linux-gnu/libdl-2.13.so
7fe62473a000-7fe62473b000 r--p 00002000 08:07 191798
/lib/x86_64-linux-gnu/libdl-2.13.so
7fe62473b000-7fe62473c000 rw-p 00003000 08:07 191798
/lib/x86_64-linux-gnu/libdl-2.13.so
7fe62473c000-7fe624757000 r-xp 00000000 08:07 136865
/usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7fe624757000-7fe624956000 ---p 0001b000 08:07 136865
/usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7fe624956000-7fe624957000 r--p 0001a000 08:07 136865
/usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7fe624957000-7fe624958000 rw-p 0001b000 08:07 136865
/usr/lib/x86_64-linux-gnu/libxcb.so.1.1.0
7fe624958000-7fe62497f000 r-xp 00000000 08:07 143229
/lib/x86_64-linux-gnu/libexpat.so.1.5.2
7fe62497f000-7fe624b7f000 ---p 00027000 08:07 143229
/lib/x86_64-linux-gnu/libexpat.so.1.5.2
7fe624b7f000-7fe624b81000 r--p 00027000 08:07 143229
/lib/x86_64-linux-gnu/libexpat.so.1.5.2
7fe624b81000-7fe624b82000 rw-p 00029000 08:07 143229
/lib/x86_64-linux-gnu/libexpat.so.1.5.2
7fe624b82000-7fe624b8b000 r-xp 00000000 08:07 150307
/usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0
7fe624b8b000-7fe624d8b000 ---p 00009000 08:07 150307
/usr/lib/x86_64-linux-gnu/libXrender.so.1.3.0Aborted
If I use the seaview distributed by the developer at:
http://pbil.univ-lyon1.fr/software/seaview_data/seaview4-64.tgz
I don't get this crash.
Regards,
Description: Ubuntu 11.04
Release: 11.04
seaview:
Installed: 1:4.2.10-1
Candidate: 1:4.2.10-1
Version table:
*** 1:4.2.10-1 0
500 http://mirrors.ircam.fr/pub/ubuntu/archive/ natty/multiverse amd64
Packages
100 /var/lib/dpkg/status
ProblemType: Bug
DistroRelease: Ubuntu 11.04
Package: seaview 1:4.2.10-1
ProcVersionSignature: Ubuntu 2.6.38-8.42-generic 2.6.38.2
Uname: Linux 2.6.38-8-generic x86_64
NonfreeKernelModules: nvidia wl
Architecture: amd64
Date: Mon May 9 17:55:50 2011
ProcEnviron:
LANGUAGE=
PATH=(custom, user)
LANG=en_US.UTF-8
SHELL=/bin/bash
SourcePackage: seaview
UpgradeStatus: Upgraded to natty on 2011-05-02 (7 days ago)
** Affects: seaview (Ubuntu)
Importance: Undecided
Status: New
** Tags: amd64 apport-bug natty
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https://bugs.launchpad.net/bugs/779999
Title:
seaview crash after alignment or some window resizing
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