Does it work any better if you run VLC as:
$ vlc --no-embedded-video
?
Can you attach the X11 properties of the "buggy" fullscreen window (run
"xprop" then click on the window)?
** Changed in: vlc (Ubuntu)
Status: New => Incomplete
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https://bugs.launchpad.net/bugs/774581
Title:
Gnome Panel shows in fullscreen mode
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