I've just tried to prove your assumption. I came to no clear conclusion,
but to a fine, noiselessly playing vlc. I am confused, which is why I'll
just describe my observations.

The only constant for all my trials is that the visual part of video
with pulse and audio+visual part of video with alsa worked fine in all
conditions.

What did I do?

I upgraded pulse to 1:0.9.22+stable-queue-24-g67d18-0ubuntu3.1.
-> audio with noise
-> additional observation (didn't observe this before, I guess I would have 
noticed, but neither specially checked for it): When sliding forward in video 
from position (A) to position (B), video plays from (B), audio plays from (B), 
but *additionally* for about 5 secs audio from (A) is still played 
simultaniously

I lowered the volume level of vlc from 130 % to 75 % and restarted vlc, so it 
started with 75%.
-> audio with noise

I set "Dolby Surround" to "off"; previously it was "auto" (I do only have two 
stereo boxes).
-> audio without noise, no other problems, everything is fine!

I set "Dolby Surround" to "on" (expecting the noise again).
-> audio without noise

I set "Dolby Surround" to "auto", setting volume to 130% (expecting the noise 
again).
-> audio without noise

As said, vlc does now play fine with pulse and I can't reproduce the
problem anymore.

(Vague idea: While I continously update my software, my /home including
config files are never reset. Might there be some sound releated
configuration option not directly set from the GUI, but indirectly
(option dolby surround automatically sets someBufferSetupInternalOption
to 2d9a92f) and some old indirect value survived, hasn't been consistent
with the controls visible in the new vlc's GUI, but has been used
anyway? - I'll get the backup of my data and investigate).

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https://bugs.launchpad.net/bugs/772720

Title:
  extreme noise with sound

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