> Still apt shouldn't choke because 3rd party repos make it unable to access
the main Ubuntu repos, and subsequently complain with inaccurate error
messages about the URLs it thinks it cannot access.

I agree.

My experience with this issue suggests that my crappy internet connection is
causing apt to time out when it can't reach the repos quickly enough. But
even if my connection is to blame, apt should be more resilient.  Maybe by
simply retrying a couple of times.

With regard to GUIs, I experience this issue in the CLI as well as in
Synaptic.

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https://bugs.launchpad.net/bugs/574886

Title:
  Apt has strange network errors when updating indexes.

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