This bug was fixed in the package embassy-phylip - 3.69+20100721-3

---------------
embassy-phylip (3.69+20100721-3) unstable; urgency=low

  * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
    (debian/rules) LP: #770835.
  * Incremented Standards-Version to reflect conformance with Policy 3.9.2
    (debian/control, no changes needed).
  * Updated debian/embassy-phylip.lintian-overrides for lintian 2.5.
  * debian/copyright validated with config-edit.
 -- Ubuntu Archive Auto-Sync <[email protected]>   Sun,  15 May 2011 15:56:40 
+0000

** Changed in: embassy-phylip (Ubuntu)
       Status: New => Fix Released

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https://bugs.launchpad.net/bugs/770835

Title:
  embassy-phylip version 3.69+20100721-2 failed to build on amd64 with
  GCC-4.6/oneiric

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