I have some kind of idea what the cause of the problem is:

While observing the applications on keyboard failure they were pretty random, 
sometimes 
Chrome, vim or texmaker. But every time Adobe Acrobat Reader was running in the 
background.
Additionally on plugging in another USB-Keyboard when the internal one ceased 
working 
due to the error I could see strange things happening(windows were changing 
focus rapidly until
system stopped being responsible) until I closed Acrobat. 

Maybe this could be a hint for the cause, i.e. Acrobat? I changed to Evince as 
my pdf viewer and 
the keyboard problem did not happen since now.

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https://bugs.launchpad.net/bugs/788181

Title:
  Keyboard freeze after random amount of time

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