I recently switched to using evolution instead of thunderbird as my
default email client and I am getting the exact same issue.  Again
generally with the use of Chromium in the same workspace, I get this
extra black"bar" that causes the mouse pointer not to line up correctly
.  So if you want to click a button you have to click about 1/4 inch
above the displayed button.  Since I get this error in evolution as well
it might be an issue with the Unity interface.

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https://bugs.launchpad.net/bugs/779387

Title:
  displaying and mouse calibration problems

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