@Fazil: What package can you reproduce with? Maybe it pops up a debconf window 
for a really short time, and closes it, but that could be enough to loose the 
focus. I have also tried to reproduce this with the latest daily Software 
center on Natty (4.1.7~bzr1862~natty1) maximized, but it behaves as is should: 
the list did not loose focus after installing in background bluefish has 
finished.
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** Changed in: software-center (Ubuntu)
       Status: New => Incomplete

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https://bugs.launchpad.net/bugs/674800

Title:
  Window Focus lost in Ubuntu Software Center after install of any
  software

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