/usr/sbin/amavisd-new-cronjob could be changed to check if use_bayes is
set to 0:
sa-clean)
grep -q "use_bayes 0" /etc/spamassassin/local.cf ||
do_amavis_cmd "/usr/bin/sa-learn --sync --force-expire"
;;
Or it can be checked for in cron.daily/amavisd-new in a similar way.
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https://bugs.launchpad.net/bugs/165184
Title:
amavisd-new + spamassassin: cronjob spams root user
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