you should be able to run a decoupled mono, but you should make sure it does 
not install anything into folders controlled by the package manager (/usr/lib/, 
/usr/bin, ... ). Commonly used folders which are save are e.g. /usr/local, 
/opt/, /srv or your home folder.
when building from source the installation folder is usually set with 
./configure --prefix=/folder/mono
If the installation has problems finding the libraries you may have to set the 
MONO_PATH environment variable to tell the runtime where the newer libraries 
are.

Security updates are backported to the stable releases of debian and
ubuntu if the issue is severe enough.

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https://bugs.launchpad.net/bugs/805717

Title:
  package libnunit2.4-cil 2.4.7+dfsg-6 failed to install/upgrade:
  subprocess installed post-installation script returned error exit
  status 9

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