My laptop has the same problem. Pointing, clicking, right-clicking, and
tap-to-click worked fine. The side-scroll and middle button did not.

I performed a "sudo dpkg-reconfigure -phigh xserver-xorg" and it
corrected the problem, along with another xserver problem I had.

See https://wiki.ubuntu.com/LaptopTestingTeam/AcerAspire3003WLMi for
more details.

-- 
xorg.conf - synaptics touchpad misdetected?
https://launchpad.net/bugs/46700

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