The function "apply system-wide" should at least also update
/etc/apt/apt.conf including authentication credentials. This would fix
many issues (also the following).

An additional remark for those who will sometimes address/fix this
issue. There is also a little problem with "sudo" as it will clear the
environment variable http_proxy in case it have been set before. One
solution could be to use "env_keep". But this could be a security
concern. Maybe sudo has another way to define environment variables in a
fixed way.

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https://bugs.launchpad.net/bugs/602254

Title:
  Proxy "Apply System Wide" does not preserve authentication settings

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