It affects me too.
To corrupt the behavior of the keyboard shortcut, it is enough to just open and 
close the "preferred applications".
What has been changed? How can I undone that? I tried to snapshot my whole home 
directory before and after, but could not see any changes. (The zeitgeist data 
hub (which is constantly changing files..) was not started.)

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https://bugs.launchpad.net/bugs/800927

Title:
  setting thunderbird as preferred email application corrupts "Launch
  Web Browser" shortcut

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