I have exactly the same problem with a normal 32 bit PC and the same
E400 monitor mentioned above. Resolution is wrong, 640x480, 60 Hz. Some
bugs marked as duplicates don't mention 64bits either.

Hardware. 
- Sony Multiscan E400 19" Trinitron CRT monitor
- Pentium III coppermine 800MHz 32 bits
- Matrox Graphics, Inc. MGA G400 AGP 32 MB

Software:
Ubuntu Dapper 6.06 LTS Desktop Live CD

After boot, my resolution is 640x480, 60 Hz. Should be 1280x1024, 85 Hz
(Monitor Menu: Help: Recommended resolution). Can be fixed on installed
system by modifying xorg.conf.

$ sudo ddcprobe  # with linebreaks removed
vbe: VESA 2.0 detected. oem: Matrox Graphics Inc. memory: 32768kb
mode: 640x400x256 mode: 640x480x256 mode: 800x600x16 mode: 800x600x256 mode: 
640x480x32k mode: 640x480x64k mode: 640x480x16m
mode: 800x600x32k mode: 800x600x64k mode: 800x600x16m mode: 132x43 (text) 
edidfail

$ sudo xresprobe nv
id:
res:
freq:
disptype:

-- 
vbetool should subsume ddcprobe, use x86emu
https://launchpad.net/bugs/8177

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