White icons and no logout button was my problem too after upgrading from
10.04 to 11.10 through the releases 11.10 and 11.04.

Found a solution by coincidence: had also a mismatch in wallpaper
resolution and opened the select wallpaper (background) menu by right
clicking on the desktop.

When clicking on the different themes I discovered that "Ambiance" and 
"Radiance" triggered the correct appearence to the white icons. And also showed 
the log out button at the clock.
Selecting the 'contrast' themes regenerated the white icons.

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https://bugs.launchpad.net/bugs/873545

Title:
  After update Nautilus icons are black/white, no decorations of
  breadcrumb etc.

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