Just got to say, I had this problem with Lubuntu - and it seems to be
solved if you wrap the usb cable around some ferrite - there may be
interference when a usb hard drive or other high emi device is plugged
in or activated that sends the hub into a state of panic. Might be worth
a shot .... worked for me :)

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https://bugs.launchpad.net/bugs/204857

Title:
  USB port disabled by hup (EMI? re enabling)

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