Ok, so after investigation the bug is not a gtk one but one in those softwares,
their exec line should have a % argument to specify they can take filenames on
their command line:
http://standards.freedesktop.org/desktop-entry-spec/1.1/ar01s06.html
** This bug is no longer a duplicate of bug 882900
softwares that don't take a command line argument should be filtered out
** Package changed: nautilus (Ubuntu) => gdebi (Ubuntu)
** Changed in: gdebi (Ubuntu)
Status: Incomplete => New
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https://bugs.launchpad.net/bugs/891101
Title:
Unable to select a program like default app for deb packages
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