I'm not sure this is the same issue but I do often observe new windows not 
getting focus (not always).
This happens _almost_ systematically with Skype (when you click the tray icon 
and chose "activate" from the dropdown menu, which opens skype's main window) 
and occasionally with other programs.
The dock panel shows up with the icon of the new window's application 
vibrating, but the newly created window doesn't show up (it's somewhere on the 
background).

By the way, the very same (except there was no dock) used to happen back
in 10.10 with gnome, so there's nothing new to me.

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https://bugs.launchpad.net/bugs/642994

Title:
  New windows don't get focus

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