I don't know if this is same kind of freeze that you experience, but
when Eclipse freezes and I click few times the desktop,  it solves the
problem.

I have other annoying problem where context menu (richt mouse click) is
too fast in web browsers (Firefox or Chrome) and double clicking in the
desktop few times solves the problem. Are these related?

I have Ubuntu 11.04,  Eclipse Indico, and system is x86_64

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https://bugs.launchpad.net/bugs/326477

Title:
  Eclipse continually freezing on 64-bit for some seconds

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