Under "Setup->Misc" there is a option: "Keep child windows always on
top"
By unchecking it upon restart qjackctl displays in the toolbar and on
top of any other windows.
This is the flag causing the problem.
if (settings.bKeepOnTop)
wflags |= Qt::WStyle_Tool;
--
qjackctl main window doesn't show on fiesty
https://bugs.launchpad.net/bugs/114720
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