This is no longer the case in update-manager as it just starts the
service one time:

    def enableApport(self, fname="/etc/default/apport"):
        """ enable apport """
        # startup apport just until the next reboot, it has the magic
        # "force_start" environment for this
        subprocess.call(["service","apport","start","force_start=1"]) 

You can see it may used to have modified /etc/default/apport though.
Regardless this is Fix Released.

** Changed in: update-manager (Ubuntu)
       Status: Triaged => Fix Released

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https://bugs.launchpad.net/bugs/518043

Title:
  Modifies /etc/default/apport during upgrade, causing conffile prompt

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