To provide the sequence of what I think is relevant log files, I did
this:

boot cold in to 3.2.0-17 -- trackpad not working (precise-kernel-coldboot)
warm reboot into 3.2.0-17 again -- trackpad not working (precise-kernel-reboot)
warm reboot into 3.2.1-030201 -- trackpad works (upstream-kernel-reboot)
warm reboot into 3.2.0-17 -- trackpad works (precise-kernel-afterupstream)

I saved Xorg.0.log and dmesg after each boot. After stripping off the
timestamps, I notice that the main difference is that the apple trackpad
is initialized *much* later with the 'afterupstream'. Also I notice that
this message is no longer in dmesg after the upstream 3.2.1 kernel is
booted:

bdi 1:0: hash matches
acpi device:19: hash matches

I have attached the results of this debugging sequence, the tags in
parenthesis above correspond to the log file names.

** Attachment added: "debug-trackpad.tgz"
   
https://bugs.launchpad.net/ubuntu/+source/linux/+bug/936552/+attachment/2759760/+files/debug-trackpad.tgz

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https://bugs.launchpad.net/bugs/936552

Title:
  MacBookAir 4,1 trackpad does not work with synaptics driver until boot
  into 3.2.1 kernel..

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