apt can only know about these dependencies when the package declares
them. Not sure if that is the case with the skype package. As a work
around, you can use 'apt-mark' to prevent those packages from being
autoremoved.
Does the problem still exist on Precise, I use skype there and at least
the packaging system is up to the task to install and remove it.
** Changed in: apt (Ubuntu)
Status: New => Incomplete
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https://bugs.launchpad.net/bugs/840048
Title:
apt-get incorrectly prompts user to remove required i386 packages in
multiarch environment
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